I've done as you described, after reading the commands' man pages to understand them. I will review the included Read Me.app as you suggest (why is this text file an application? in case the computer's installed text editor isn't working?) and try running the software from startup soon.
Here's the relevant parts of my Terminal, in case you wish to double-check me (or see what my downloaded filenames look like):
Last login: Mon Mar 2 15:59:52 on ttys001
[computer name]:~ [account name]$ pwd
/Users/[account name]
[...]
[computer name]:~ [account name]$ ls ../../System/Library/CoreServices/.diagnostics
ls: ../../System/Library/CoreServices/.diagnostics: No such file or directory
[computer name]:~ [account name]$ ls -a ../../System/Library/CoreServices/.diagnostics
ls: ../../System/Library/CoreServices/.diagnostics: No such file or directory
[computer name]:~ [account name]$ cd /Volumes/AHTCOne
[computer name]:AHTCOne [account name]$ cd /Volumes/AHTCOne/System/Library/CoreServices/
[computer name]:CoreServices [account name]$ ls .diagnostics
CommonAHTResources Mac-F222BEC8 diags.efi
[computer name]:CoreServices [account name]$ ls /System/Library/CoreServices/.diagnostics
ls: /System/Library/CoreServices/.diagnostics: No such file or directory
[computer name]:CoreServices [account name]$ man ls
[computer name]:CoreServices [account name]$ ls -a /System/Library/CoreServices/.diagnostics
ls: /System/Library/CoreServices/.diagnostics: No such file or directory
[computer name]:CoreServices [account name]$ sudo mkdir /System/Library/CoreServices/.diagnostics
WARNING: Improper use of the sudo command could lead to data loss
or the deletion of important system files. Please double-check your
typing when using sudo. Type "man sudo" for more information.
To proceed, enter your password, or type Ctrl-C to abort.
Password:
[computer name]:CoreServices [account name]$ man ditto
[computer name]:CoreServices [account name]$ pwd
/Volumes/AHTCOne/System/Library/CoreServices
[computer name]:CoreServices [account name]$ ls -a
. ._Volume Name Icon Volume Name Icon
.. .diagnostics
[computer name]:CoreServices [account name]$ sudo ditto .diagnostics /System/Library/CoreServices/.diagnostics
Password:
[computer name]:CoreServices [account name]$ cd /System/Library/CoreServices/.diagnostics
[computer name]:.diagnostics [account name]$ man xattr
[computer name]:.diagnostics [account name]$ pwd
/System/Library/CoreServices/.diagnostics
[computer name]:.diagnostics [account name]$ ls -a
. CommonAHTResources diags.efi
.. Mac-F222BEC8
[computer name]:.diagnostics [account name]$ sudo xattr -dr com.apple.quarantine CommonAHTResources/
Password:
[computer name]:.diagnostics [account name]$ sudo xattr -dr com.apple.quarantine Mac-F222BEC8/
[computer name]:.diagnostics [account name]$ sudo xattr -d com.apple.quarantine diags.efi
xattr: diags.efi: No such xattr: com.apple.quarantine
[computer name]:.diagnostics [account name]$