Well, this discussion has been quite useful with my setup.
It seems that I also began having unwanted late 2013 MacPro crashes and restarts after upgrading from OS 10.10.1 to 10.10.2.
The restarts occur when my automatic programmable power timer shuts off my OWC Thunderbay 4 bays enclosure (filled with 4 x 3.5 inch hard drives.) Even before 10.10.2 I was having strange problems (like SecuritySpy cameras freezing up when powering on the TB4; strange indeed), but now things are more serious with consistent crashes restarts of my MacPro whenever the TB4 is powered off. I had tried a lot of different fixes, but none of them solved these problems.
Following several suggestions here I now program (using Keyboard Maestro, a great macro program) my MacPro to sleep before my automatic power timer turns on or off the TB4. Also I discovered that the TB4 needs about 30 seconds to totally sleep after the MacPro is put to sleep; after that period of time I then shut off the TB4 power (using a programmable power timer). A bit of a work-a-round, but no more MacPro crashes and restarts, and no more SecuritySpy camera freeze-ups. I also use Mountain to mount and eject external drives at night for my nightly backups. Similar to Jettison.
It is unfortunate that for some people the sleep before powering off does not work for them. Try waiting a minute after sleeping before powering off.
In any case, I think the crashing and restarting is a new problem created by OS 10.10.2. I hope Apple fixes this sooner than later.