The screenshot are here as you requested... There is something weird that happened. Although the handbrake conversion reduced the file size sometimes down to 33% , it also looks sharper but even the colors are different. Do you know why this happens? Look at the image comparing the 2.
Not feeling my best, but I will try to answer as best I can. Basically, there are a number of different things at work here: color space, chroma subsampling, and dimension issues.
QT tracks three forms of dimensions:
- The dimensions at which a file is encoded,
- The normal dimensions at which the file opens for display, and
- The file's current display dimension.
These attributes can range from non-anamorphic, unscaled file in which all attributes are the same to an anamorphic file which has been manually scaled for display and in which all of the attributes are different. In the case of the Screen Capture you created a non-anamorphic file using your screen dimensions for all three settings. When you used the automatic settings in the QT X player to convert the screen capture file, it select the "Greater Quality" encode settings and the 720p dimensions setting because the 750p source was less than 1080p but greater than 720p. On the other hand, you did not reset the dimensions for either the QT 7 or the HandBrake conversions so the original 1000x750 source file dimensions were passed to the converters unchanged. As to the Finder Conversion, you did reset the dimensions (or left the default 480p setting unchanged) which scaled down the file dimensions to 640x480 and tends to sharpen the original image as blown up for full screen capture. As to the HandBrake, if you used one of the Level 4.1 presets, that could account for its improved sharpness
With regard to the color shift, your animation file was encoded in the RGB color space while I believe all of your other files are in the YUV color space with the ProRes 4444 probably using 4-2-2 chroma subsampling and all of the H.264 file probably using 4-2-0 chroma subsampling and thus probably demonstrating the most color shift. (But I can't really be certain without examining the files themselves.)
Before I can make any further recommendations I must know what the actual goals of your workflow are and in what prioritized order. Since file sized and display sharpness are directly related to the encoding dimensions, what minimum display dimensions are we looking at? How important is the color shift? Must the target output files be QT X and QL compatible? Will the final file use support an anamorphic workflow? Will you be keeping the Animation file as an Archival copy? What do you plan to do with or how do you plan to use the converted file (archival or distribution use)? etc., etc., etc.