I have the same issue, but with my iPad ONLY, and NOT my iPod so have tried the following:
Delete the duplicate playlists on iPad, and iTunes separately (ones with suffix 1) then re-sync. DID NOT WORK - more duplications on BOTH iPad and iMac - repeat all of the above steps, over and over - very very annoying.
Delete ALL music and playlists on iPad and then the DUPLICATE playlists ONLY on iTunes, so leaving only the ones I want to keep, then re-sync. DID NOT WORK. EVEN WORSE, it DELETED ALL of the Playlists on iTunes, so now I've LOST ALL my Playlists. Even more irritating. Why?
Seriously, Apple, what is going on? Syncing, basically does not work. I now dare not sync my iPod any more because all the Playlists are gone. So disappointed - more so with the lack of actual response from Apple themselves.