I have tried every permutation I can think of.
The worst I get is this:
What you see is the top of the screen and does not sound like "the lines" you describe.
Doesn't appear to be head switching, that was one of thoughts, this quirk only goes halfway along the top.
If I import over firewire from camera to FCP X this is not seen.
I believe it's an artefact created by using HDMI to a Black Magic box capturing to Media Express.
I've added filters, no change.
Might be worth double checking there is no PAL/NTSC mixup:
All my exports rendered the same results as per the top screen shot. DVCPRO50 or Prores 422.
My equipment is slightly different to yours so anything in your chain could be the offender.
I'll wait for that screen shot on Monday. 🙂
Al