Multiple Displays have problems with El Capitan
I upgraded to El Capitan last week. Immediately after restarting from the install, my 2nd and 3rd monitors no longer displayed anything. It's like they were turned off. I tried restarting, but nothing changed. I then tried switching cables to different ports and seeing what would happen with just a single monitor plugged in, here's what I found.
Machine Info:
MacPro
32GB RAM
AMD FirePro D500 3072 MB Graphics
27" Apple Cinema Display (x2) using Thunderbolt
13HD Wacom Cintiq using HDMI
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When 1 monitor was plugged in, it would work fine.
When 2 were plugged in, only the first monitor would work
It seems that changing ports made no difference, only 1 monitor would work at any given time. I also had issues with some external drives failing to mount.
I called AppleCare and they had me reset the SMC on the MacPro. This seemed to fix it until I setup my second cinema display with Apple Calendar and Apple Mail in the new split view and quit the applications without exiting SplitView first. Doing this blacked out the second Cinema display and I had to repeat the SMC reset procedure (listed below). It happened again about an hour later after a restart, I called AppleCare again and the tech led me through the SMC reset steps again and all monitors began working properly again. Within the next few hours the same problem happened again...I am now back on Yosemite until I see something indicating this problem is fixed.
I noticed that Beta users had this problem documented quite a bit on the .3 release, but I saw that the .4 release seemed to fix the issue. Well, it did not. I caught lightening in a bottle and it's happening to me.
SMC Reset Procedure
1. Shut Down computer if it's not already shut down
2. Unplug all peripherals and computer for 30 seconds
3. Plug in computer to power and one monitor
4. Start-up and check to see if monitor is working
5. If monitor is working then plug-in second display and restart
This worked for me and I was able to plug up the other peripherals.
I'm not sure why the problem persists, but everything is completely stable and operates fine on Yosemite.
Mac Pro, OS X Yosemite (10.10.5), iMac 27" 8GB i7