Add me to the list of people with the "Did Not Eject Properly" problem.
All Hardware is BRAND NEW out of the box 4 weeks ago:
iMac 27" Retina 5k (Late 2015)
El Capitan 10.11.4
External drives:
1. LaCie 2Big 6T Thunderbolt2 RAID 0
(External Power, Thunderbolt directly into the iMac)
2. GTechnology G-Drive 6T USB 3.0
3. GTechnology G-Drive 4T USB 3.0
(Both on external power, both connected to a USB 3.0 hub, connected to the iMac)
From day one, the LaCie 6T RAID has ejected itself ALMOST every time I wake the iMac up from sleep. Never when it was in use. But when I put the iMac to sleep, and wake it up the next morning, the LaCie 6T RAID is gone from the desktop and I get the error message. If I unplug the Thunderbolt cable from the back of the iMac and plug it back in, the LaCie shows up on the desktop and everything is fine.
The GTechnology G-Drives connected with USB 3.0 have never ejected themselves... Always work perfectly.
I tried getting rid of the thunderbolt cable from the LaCie and connecting it with the optional USB 3.0 cable and continued to receive the error message and ejections.
I called LaCie and spoke to two techs. One suggested it was a drive problem and I was going to initiate a return of the LaCie 2Big but then speaking with a second tech, she suggested trying the drive on a different Mac. All I had was an old MacBook Pro running Snow Leopard... I plugged the LaCie into the MacBook via USB 3 and everything worked perfectly. Repeatedly sleeping and waking the laptop re-mounted the drive every time. So it's not the Drive. It's ElCapitan. The tech mentioned something about "Apple changed how thunderbolt ports work starting with Yosemite... that they were shut off or shut down on sleep and they cut off the external drives." She said that they started getting lots of reports of this happening around that time.
ALSO: I tried the Mountain app to try to ease the hassle of plugging and unplugging cables every time I wake from sleep. When I use Mountain to UNmount the thunderbolt drive before sleep, then sleep the iMac, Mountain is supposed to REmount the Lacie thunderbolt drive on waking... but the drive just disappears. Even Mountain can't find it on waking. At least I'm not getting the error message, but I still need to physically unplug the thunderbolt cable and replug the cable for the drive to be seen and remount... every time I sleep my mac.
HEY APPLE: I've been a dedicated customer for 22 years. THIS IS UNBELIEVABLY ANNOYING.