Hello,
I have the same problem since I upgraded to El Capitan. My MacBook Pro 15" (Late 2011) with 16 GB RAM and 2,2 GHz i7 goes crazy after a couple of minutes after I started to work. I don't use any CPU-intensive apps, only a standard office stuff (Safari, Mail, Excel). I found a lot of system tasks consuming a lot of CPU - backupd, mds/mds_stores/mdworker, syncdefaultsd, accountsd, kernel_task and especially Mail. I have exchanged battery, reinstalled OS X from the scratch, I don't use any antivirus software but I can still boil eggs on my MBP as is it hot as ****. ;-(((
I sent a lot of sysgiagnose reports to Apple, but unfortunately non of it helped - there is still no conclusion nor solution for this culprit. And it's really annoying. It seems like something is heating CPU permanently, so when you run any quite intensive task (like checking the mail), your MBP goes crazy, fans spin for 100% because of the heat.
Even when I write this entry, my computer "does something" for 25% of its CPU (kernel_task 21,5%).
I hope anybody will find any reasonable solution, because it's really annoying.
Pavel
P.S. Do you experience this issue when running on battery? I found it mainly when I'm connected to the AC plug.