I am also having this problem. I have a Magic Mouse and the mini bluetooth keyboard (both the penultimate models; ie non-lightning-port). After a reboot they will all work as advertised for a couple hours but then begin disconnecting on an irregular but frequent-enough-to-be-maddening schedule. Both devices usually disconnect within a second or two of each other. I madly click the mouse or Cmd-Tab the keyboard for a few seconds (say 10) and they reconnect. Disconnection occasionally happens as quickly as 60 seconds later. It is infuriating. And its onset coincided with the ElCap upgrade. I vaguely remember occasional disconnections under Yosemite, but it was nothing like this.
* Mid 2012 15" MacBook Pro
* I have no USB external drives attached.
* Have done the SMC and NVRAM resets without joy
* There are no other bluetooth items in the apartment (except iphone, bluetooth explicitly turned off)
Nothing else to add just wanted to post this in the (vague) hope that heavy threads on this site might attract attention.
system.log at the time of a (mouse) disconnect:
Nov 2 13:25:44 axlbook2 kernel[0]: Setting BTCoex Config: enable_2G:1, profile_2g:0, enable_5G:1, profile_5G:0
Nov 2 13:25:44 axlbook2 kernel[0]: [HID] [MT] AppleMultitouchDevice::willTerminate entered
Nov 2 13:25:44 axlbook2 kernel[0]: [HID] [MT] AppleMultitouchDevice::stop entered
Nov 2 13:25:44 axlbook2 loginwindow[100]: Preferred Localizations total: 1 contents (
English
)