I just found this topic, and I know it's a little old at this point, but just wanted to clarify a couple things.
First,
Yes CountryGirl56, I did run the uninstaller. However, it left system files. Some of these were in the staged extensions folder
Those files are not put there by Malwarebytes. Recent versions of macOS put kernel extensions there temporarily, except it doesn't seem that it's actually temporary, and they stay there long-term. That folder is not modifiable by anything other than macOS without disabling a security setting, so not only can Malwarebytes not put those files there in the first place, there's nothing that it can do to remove them. Those "staged" kernel extensions are not active in that location, however, so I wouldn't see it being a high priority to worry about them. You could do yourself more harm by disabling the security of your system in order to remove them than by leaving them to take up a small amount of disk space.
when I go to the Security & Privacy panel in the System Preferences, some times the General tab asks if I want to Allow the software from Malwarebytes Corporation. Why is this program still showing up in the Security & Privacy panel?
There are two possibilities. One is that the uninstaller didn't work properly. That could be due to a problem with your system, or could be that you used the wrong installer. If you tried to remove a recent version of the software - which includes its own bundled uninstaller - using an old Malwarebytes 3.0.x uninstaller, that won't work right.
If you still see the Malwarebytes kernel extension (which, in recent versions, is named MB_MBAM_Protection.kext) in the /Library/Extensions/ folder, then that's likely to be what happened.
The other possibility is a High Sierra bug, and unfortunately, there seem to be a number of High Sierra bugs involving that Allow button in Security & Privacy. Sometimes it doesn't show up when it's supposed to, sometimes it refuses to respond to clicks properly, and sometimes it doesn't actually allow the kernel extension as it's supposed to. Malwarebytes has no control whatsoever over the behavior of that Allow button.