So I figured this out
1st the target Mac OS needs to be in disk space 1 in a mac pro. (this is in the instructions)
You can have other disks inserted... for now
Before you run bootcamp you need to turn off time machine and unfortunately you need to reformat and reinstall the OS disk = ouch!!! But no other way to get over the space issue.
Now you can run bootcamp and it creates the BOOTCAMP partition on the Mac OS disk.
When Windows installation starts it is using the CD or USB (ISO) so now you need to have the side of the MP open and you need to remove or pull-back the other drive sleds - so that ONLY the target disk is in the machine (I also removed my projects scratch ssd from pcie)
Now windows can install as required. Seems as mentioned here that windows can only have 1 disk in the machine to not throw some x800xxx error.
Apple Bootcamp instructions are incorrect as they instruct you can - but you can't.
Install restart - hold the option key and back to Mac, remove the windows CD, check the default start-up disk and away you go. Windows 7 and some fun old games like settlers and Civ III (much easier to play than boot camp ;-) )