Open user library see this article macOS Sierra: Library folder
Find a folder mail , tap it to get highlighted , right click over it and click on copy mail .

Again , right click on the empty desktop and click on paste item.

The mails will start copying let the bar be loaded completely .

Open finder from the dock under iCloud Drive you can see the V6 folder , if you are using Mac OS Sierra the folder would be V4 .
But this process is done just save all mail data when you just want to keep the data on external hard drive or usb stick .
In your case if the mail data is excessive reduce the mail data by using the steps in these articles Free up storage space for email accounts in Mail on Mac - Apple Support
View, save or delete email attachments in Mail on Mac - Apple Support
Import or export mailboxes in Mail on Mac - Apple Support
Create or delete mailboxes in Mail on Mac - Apple Support
Read this also How to free up storage space on your Mac - Apple Support
What is 'Other' and 'Purgeable' in About This Mac? - Apple Support