*Hi Dane. Great thanks for helping us!*
I'll answer your q's
+With the Magma, do you still keep 1 Core card in the host computer?(with HD3 i have all cards inside my mac.)+
Only Magma-card in computer (since it's PCI-Express) and all the (4) PT-cards (including core) in Magma. I have 1 HD Core, 1 HD Accel, 2 HD Process. All checks out "passed"
+Are you running SpotLight?(I have mine turned on on the main OS X HD, ad off on my Recording/Audio/Logic&Pro Tools Sessions.)+
Tried both.
+Are you using a dedicated, separate (from the OS) HD for ALL Recording/Audio/Logic&Pro Tools Sessions?+
Yes.
+Have you tried removing ALL plugins from there normally kept folders, and booted? Keeping the plugins in a folder on your desktop? to see if they are interfering..+
Yes. In addition, I've made 2 separate fresh Leopard
PTLogic installations on 2 separate HD's, to be able to try different things . .
+Read this it helped me understand what is happening technically.+
+
http://www.logicprohelp.com/viewtopic.php?t=254&highlight=+
Ok. I actually glanced at it . . but I'll read it again, thoroughly!
+Have you read though a followed the Logic Pro 8 TDM Guide located here and in your Logic app?+
+
http://manuals.info.apple.com/en/LogicPro_8_TDMGuide.pdf+
Yes. Very uninformative indeed. I must say, having been a Mac-freak since early '90s, Apple's support and documentation on possible and reported problems really *****. It feels like the TDM-crowd was abandoned the minute Apple bought Logic.
+Simple, but is you Logic Pro working fine with only Core Audio running? (no DAE & DTDM)+
Yes.