Hi Deb,
I agree that the MPs are heat monsters, especially the 2007 Intel "Clovertown" Xeon variants which I got my hands on unfortunately. The one in my workplace which is a 2008 Harpertown variant runs much cooler on load, every now and then my colleagues seemed to wonder what I was up to every time I dig around the office Mac Pro hunting for the same smell, it lacks any.
I've got plenty of people telling me that such compounds running off circuit boards should dissipate by weeks if not months after acquiring the MPs, most of them did a run-in on their machines. Mine have been on load for almost 2 years, and yet it is still there.
What I'm really concerned is whether or not the thermal paste or whatever smell it is emanating from the Mac Pro is toxic...? It seems Apple either has no knowledge or are denying the facts to avoid a class-action suit. AppleCare kept denying that such smell is health-threatening. And when I question them about the risk of constantly loading the processors too high a temperature, they'll simply brushed it off by saying "if the MP does not shut down by itself, it's probably fine". I'm talking about 80+ºC with just 6 cores loaded at a heightened CPU fan speed of audible 1200rpm on an ambient temperature of 24-26ºC (1450rpm for unconditioned 29ºC). The last time I defaulted it to Apple's MP SMC-controlled settings, it ran close to 100ºC without even shutting down, much to the risk of a burnout.
Even when I've gotten my Mac Pro for the first few months, I've resigned to the fact that the processors and the PSU runs hot at only 6 cores loaded, but the recent re-application of the thermal paste by a local AASP on the same reported issue just make matters worse. Processor temperatures ran an average 5ºC hotter than as before. Imagine the temperature if I were to maxed out all 8 cores.
Moisture (to the extent even without the need for an air-conditioner or a table fan to cool the room) only exist when my Mac Pro is turned off.