To anyone facing this issue, this is just APPLE BEING APPLE. Not that Windows is Immune. For whatever reason (Apple knows better than you what you want and need AND YOU MUST OBEY), they made FACETIME incapable of balancing audio with other applications that have sound, including Youtube.
This reason is simple, when you use FaceTime, Apple wants you using NOTHING ELSE. So you must surrender your sound options unto Big Brother.
But there is a simple work around.
Use Skype.
When you use Skype, the sound Nazis at apple are defeated. This is the typical issue(s) surrounding Apple. It is the only reason they cannot completely dominate the computer market--their ego. They're so self obsessed that even when you use FaceTime, they have to hijack your sound.
Just use Skype.
They have a much better sound platform and it will **** Apple off. That's good enough.