Hi, I just wanted to updated this chat with what's happened this morning with my iMac.
Every-time I have connected my HDD to carry out a Time Machine back-up since having this issues with FileVault the message that pops up saying that FileVault is doing it's thing has always given a time of about an hour for it to do what ever it thinks it was doing. So today I though I would connect my HDD and leave it and see what it does, however on connecting my HDD I was able to instantly carry out a back up with Time Machine and had no issues with FileVault. Since then I have done two back up's and everything has all worked OK. I have re-started to my iMac and everything is now back to normal, meaning the small red ! mark I get on the Time Machine presences has now gone.
I'll give it a couple of days of normal use and see what happens.
Anybody else now able to carry out a back-up OK?
I have not altered any settings or done anything since carrying out the normal checks.