How to restore deleted files (ie. Apps, App package contents, etc.) to their original location without ‘Put back’ option.

I accidentally deleted some files from my MacBook Pro using the app 'Appcleaner'. There is no 'Put back' option when I right-click on these files from the trash (since files were deleted by Appcleaner, which is a third party app). Therefore, I manually dragged all the deleted files out of Trash Can and into my Applications folder, but some weren't restored properly. I would like to know how I could restore the apps I've deleted along with their package contents in their former places.

If worst comes to worst, I can’t recover my files the way that they were initially, can I restore them via my iCloud? I have everything on my MacBook Pro backed up on iCloud, but now I’m thinking that what I had before might have gotten overwritten by my now ‘damaged files’ since iCloud updated constantly.