Don't worry about being new to this. I've been doing it 34 years and learn new things every day. The important thing is that you HEARD it. You may not know (yet) what it is or what it's called or how to fix it but your ears told you that something was wrong. That, my friend, is the most important thing. yoyoBen is correct about learning about phase and his questions relevent but it's quite scary when something is horribly out of phase and the person doing the work doesn't hear it!!
So, yoyoBens questions, look at those, think about them and answer them.
As an experiment, and to help you get your head around phase issues, make 2 (or more, depending on how many different hi hat tracks you have) and only have those elements on those tracks so that you can solo them and really hear where the issue is. On one of the tracks, put a gain plugin and flip the phase (you'll see the buttons for that in the gain plugin).
What you'll find with that is the ones that were phasing may now be fixed and the ones that were ok will now start phasing.
See if the hats on the different tracks are in exactly the same position. Sometimes though, the actual sounds have different lengths, attacks, releases etc and this can also cause an issue.
Bounce the hat tracks to audio (but keep your midi as this is just an experiment) and see how far out the waveforms are on your hat tracks. Try manually alligning them to improve things although this could also make it worse, that's the nature of audio.
Go to youtube and lookup examples of out of phase audio. Keep it simple at first.
yoyoBens most important question 'why?'. As you are producing the the track the answer can be as simple as 'I want to" which is fine. But as you're also the engineer you now have to make it work.
You'll get there. Keep going. Do lots of research. Do lots of experiments.