Here is a picture of a stock B&W G3 opened up. One large case fan exhausts out the back, and there is another fan on the back exhausting air from the power supply. Outside air is drawn into the vents on the front, and hot air is pushed out the vents on the back.
Not sure where those little fans you are talking about are installed.
https://www.cultofmac.com/wp-content/uploads/2017/01/powerMac_G3_print_spread.jpg
One thing to check when you open it up, is the thermal paste on the CPU to heatsink contact point. If that has dried up or does not have good thermal contact, then it won't really matter what the fans are doing, the CPU will just overheat anyway. A small dab is all you need, but you might need to clean the old paste off first. Look up some videos on how to do that. That will ensure that the heat sink is actually doing its job in the first place.