I believe this is the a solution on this problem.
** Disclaimer: You MUST be very VERY careful typing this command in Terminal, any mistake and you can risk renaming or deleting all files in your System/Extensions folder!!! **
First, make sure you have gfxCardStatus installed and set it to Discreet Only.
Then go to your terminal and type or copy/paste in the following command:
sudo mv /System/Library/Extensions/AppleGraphicsPowerManagement.kext/ /System/Library/Extensions/AppleGraphicsPowerManagement.disable
Enter your password.
Quit out of Terminal and restart your computer.
After restarting, allow your computer to enter into sleep mode (in Energy Saver, slide the bar to 1 minute to put it to sleep sooner). Wake it up, and run your computer normally. Go to Safari and see if your scrolling has improved or not. If it has, you can change gfxCardStatus back to Dynamic Switching.
Let me know if this worked for you.
Source: http://www.youtube.com/watch?v=gmoWoeNrkOs