My drive is an external hooked up via USB.
Glenn -> it's anecdotal but in talking to two of my friends who are running El Capitan, both of their machines (a MacBookPro and an iMac) are backing up normally. The other reason I can't imagine it being very widespread is that I think it would be less likely to have slipped through beta testing, but in any case it's hard to know for sure, you may be right.
Swamp Fox -> wow, I'm impressed that you made the effort and surprised it didn't work. Good information to have though.
net nothing -> the reason I'm wondering is this line from Apple's reply (emphasis added):
Engineering has determined that your bug report is a duplicate of another issue and will be closed.
The open or closed status of the original bug report your issue was duplicated to appears in the yellow "Duplicate of XXXXXXXX" section of the bug reporter user interface. This section appears near the top of the right column's bug detail view just under the bug number, title, state, product and rank.
I interpret this to mean that the original bug report 22239884 is now closed. When they originally closed my bug report 23004554 as a duplicate, I think 22239884 still listed as open. Again though I'm not sure whether this means that they know whats casing the problem and have a fix that has not yet been implemented, or if they think they've fixed it but are wrong.