I just got off the phone with Apple support and there may be a solution to some Touch ID issues...
After a shutdown or restart, you will have to enter a password, that is just a security issue with Apple I'm guessing.
The issue I was having was that I could not swap between different user accounts on my computer...the Touch ID and password option were not showing up so I would have to completely log out of one account in order to log in to another. This may help for some issues:
- Shut down your computer.
- Hit "Shift", "Control", "Option" and the power button all at the same time and hold it for 15-20 seconds. Nothing should happen, well, nothing that you will see anyway. (The key combination resets something with the Touch ID)
- Power on your computer normally and login as you usually would...now the Touch ID should work.
If it still doesn't work, try calling Apple, they were pretty quick and helpful when I contacted them.