Safari 10
Cookies and Caches help Safari run faster by storing relevant information locally.
But you can remove all those website data without any problem, it may even help.
Next time you visit the site, related cookies will be restored.
Websites one visits may have links embedded in to other web sites.
Those sites will store cookies in the cookies folder.
Cookies may not have the same name as the original website.
The homepage I have set, adds about 70 cookies.
A website may use service from other service providers.
When a user signs into ASC, a cookie from Badgeville will appear.
Cookies from websites added to AutoFill will appear automatically.
Websites that are related to widgets like Weather channel will reappear.
Cookies from built in search engines like Bing, Yahoo and other favorites like Facebook will reappear.
One of these may add additional cookies.
Cookies can be stored by Plug-ins and extensions installed on our Mac. There are Flash cookies.
Cookies from some of the bookmarked/favorites sites will reappear.
macOS stores cookies in different folders like Cookies folder, Databases folder, Local Storage folder, etc
It is not easy to track down these cookies.
There are”Evercookies” that are hard to delete.
This issue is not particular to Safari.
Compared to other browsers, Safari is more willing to show the presence of website data more willingly.
The “killer application” known as Internet/WWW presents it’s own peculiarities,
some of which we don’t like, but we cannot do much about it.
I wouldn’t worry much about this. Just empty caches from Develop menu and remove cookies and local storage
by opening Privacy pane of Safari Preferences, then clicking “Remove All” button.