I have the same problem with my brand new 2.66GHz Unibody 15" Macbook Pro and my 4-year old 30" Apple Cinema HD Display. The Dual-link DVI adapter firmware is v. 1.02
The problem is the same with 9400M and 9600 GT display cards: Any large black area on the 30" screen has horizontal errors in it. Opening a black web page like MobileMe gallery will immediately result to this:
http://www.youtube.com/watch?v=NuU5ztJOZEg (I just shot the video using my iPhone.)
I think zapping the PRAM and/or resetting the SMC took it away for a short while, but it always comes back.
Doesn't matter if the Macbook Pro is connected to a power outlet or not, or does it have any external devices connected to it. It always happens.
Any news about solving this issue?