Put these apps in full screen mode—
from here you can use mission control to swipe four finger up for all Full screen Apps or swipe left and right to move among them.
Use Mission Control on your Mac - Apple Support
If you think you have a bigger problem—
Boot into Recovery (Command R) and from the dropdown menu: Utilities> Disk Utility> run the First Aid on your Macintosh HD. If errors are found and repaired, run again until no errors reported.
Recovery http://support.apple.com/kb/HT4718
To trouble shoot further you can:
Try a SafeBoot https://support.apple.com/en-us/HT201262
Takes noticeable longer to get to the login screen, does a 5-15 minute disk repair before it fully boots up, and certain system caches get cleared and rebuilt, including dynamic loader cache, etc.
This test will tell you if third party interference; extensions etc are not loaded in safe boot mode.
Test issue in another user (or guest user) account https://support.apple.com/en-us/HT204443
This will tell you if it a universal issue or isolated to your user/admin account.
You can try reinstalling the Combo update:
Download OS X El Capitan 10.11.6 Combo Update - Apple Support
or
if neccessary re-install the macOS from Recovery on top of your existing macOS.