Hi Tom,
Don't know if you've given up on this (wouldn't blame you) but I've been trying to work out what is going wrong.
So what I did was:
1) Using Sony Catalyst Prepare I transcoded around 50 of the MXF files, that were originally imported by FCPX into one of the date folders in my media folder that resides on my external HD, into ProRes 4K.
So now there are the same clip names in a MXF and .MOV format in that date folder that lives in the Original Media folder that is on my media folder which corresponds to the Library I'm working in. (phew!)
2) I imported the 50 ProRes files into FCPX and left the files in place.
3) In the FCPX browser I transcoded the 50 original media clips into proxy media.
Here's what I discovered...
If I transcoded each original file in the browser individually, the proxy file gets placed in the correct and appropriate date of creation folder of the Final Cut Proxy Media folder on the external drive. It appears as {name}.mov and is a 1920x1080 file.
However, when I batch transcode (I tried it first with all fifty clips, then tried 10 and then 5 and then 3) they do not get placed in the Final Cut Proxy Media folder at all, instead they appear as those strange files in the root folder of the event folder on the external drive.
Have you any ideas why this is happening and is it a reason for the problems I am encountering, or is it something that the guys in the FCPX department of Apple need to look at?
I hope that you can help and I really appreciate your input.