Mac Pro 2013 - USB port not working after CMOS battery replacement

I've a 2013 Mac Pro cylinder. I was facing issue with powering it on, after multiple try I used to successfully make it work. Later I realised that there is a problem with the CMOS battery.

Now after replacing the CMOS battery, the unit is starting but all the 4 USB port have stopped working.

Thunderbolt ports, HDMI port & lan ports are working perfectly fine.

The USB is drawing the power but is unable to detect any devices including external keyboard and mouse.

I'm able to access the machine with screen share option from my other Mac.

Under system report this is what I'm getting

USB 2.0 Bus:

  Host Controller Driver: AppleUSBEHCIPCI

  PCI Device ID: 0x1d26 

  PCI Revision ID: 0x0006 

  PCI Vendor ID: 0x8086 

Hub:

  Product ID: 0x0024

  Vendor ID: 0x8087  (Intel Corporation)

  Version: 0.00

  Speed: Up to 480 Mb/s

  Location ID: 0x1d100000 / 1

  Current Available (mA): 500

  Current Required (mA): 0

  Extra Operating Current (mA): 0

  Built-In: Yes

BRCM20702 Hub:

  Product ID: 0x4500

  Vendor ID: 0x0a5c  (Broadcom Corp.)

  Version: 1.00

  Manufacturer: Apple Inc.

  Location ID: 0x1d110000

Bluetooth USB Host Controller:

  Product ID: 0x828d

  Vendor ID: 0x05ac (Apple Inc.)

  Version: 1.50

  Manufacturer: Apple Inc.

  Location ID: 0x1d113000

Can some one please help me with this