The "PAYGO RECOVER" charges are generally legit. This is what they do when you tap in and they attempt to charge your financial institution but the charge doesn't go through. So what happens is, the next time you try to tap in -- whether it is that day, the next week, or the next month, or probably even if you hand your device/card to a friend and they try to tap in a moment later -- OMNY will charge a "recover" charge to pay for that previous trip (or trips), then another non-"recover" charge for the current trip.
If you have an online account at omny.info, which can be useful, you should be able to see these on the site, if you go to the "Charges" section (not the "Trips" section, since the Trips section doesn't offer this detail). Here's one on mine:
Note that the trip was Aug 15 but the charge is dated Aug 17. That's because of the "recover".
In contrast, here was a trip from Aug 17 which was charged successfully when the trip was made:
This second one even has a time on it in the smaller white box, presumably because the charge was made when the trip was made.
Here is how OMNY explains this process:
From: OMNY Customer Support <customersupport@OMNY.info>
Sent: Tuesday, September 7, 2021 12:55 PM
Subject: Negative Balance/Debt Collection
Hi ,
Thank you for contacting OMNY. We have reviewed your account and determined that the account is in good standing and an adjustment is not needed.
When a tap occurs, our device will attempt to communicate with your financial institution and essentially ask permission to collect the fare. In most cases this transaction is successful. However, in your case, we were unable to fully process the charge.
There are a host of reasons for this but, in this case, we did not receive authorization from your bank to collect and process the fare. Even though we did not collect, the system allowed you to ride and as a result your account was declared negative.
When this happens, as it did in your case, the next time you tap, the same communication occurs but an attempt is made to first collect on the previously uncollected trip. The charge in question was to recover the previously uncollected fare and clear the negative balance which allows you to continue using the OMNY system.
We apologize for any confusion this may have caused and we are happy to answer any additional questions you may have.
If you have any other questions, please feel free to call us at 877-789-6669.
OMNY Customer Support
© 2019-2020 Metropolitan Transportation Authority. All Rights Reserved. All trademarks, services marks and trade names referenced in this material are the property of their respective owners. OMNY is a service provided by the Metropolitan Transportation Authority.
Also, as one of the other posters has mentioned, there's nothing about this which is specific to Apple Pay as opposed to any other payment device